Xcode for mac os x 10.7.5 install#
Xcode for mac os x 10.7.5 code#
Xcode for mac os x 10.7.5 download#
Xcode for mac os x 10.7.5 free#

Xcode for mac os x 10.7.5 install#

Luckily easy_install, another Python package manager is installed by Homebrew and we can use it to install pip: easy_install pip Install NumPy Homebrew is for installing system packages and tools for managing Python add-ons we want pip. Otherwise you run the risk of executing the wrong scripts during the rest of these instructions.Īt this point you should be able to get a fresh terminal and type which python Important: You should close your terminal and open a fresh one right now so that it has the updated PATH from the previous section. Don’t be surprised if this takes a couple minutes. Homebrew will install a couple of packages required by Python and then Python itself. Now that you’ve got Homebrew installing Python is simple: brew install python See or type brew help or man brew for more info on Homebrew. Normal executables go in /usr/local/bin/ and Python scripts installed by Homebrew go in /usr/local/share/python/. bash_profile) file: export PATH=/usr/local/bin:/usr/local/share/python:$PATH

To add Homebrew installed executables and Python scripts to your path you’ll want to add the following line to your. Homebrew installs things to /usr/local/ so you don’t need sudo permissions. To install it simply launch a terminal and enter ruby -e '$(curl -fsSkL /mxcl/homebrew/go)' Homebrew is an excellent package manager for Mac OS X that can install a large number of packages.

Xcode for mac os x 10.7.5 free#

(You’ll need a free Apple ID.) (See also. If you prefer another editor it’s possible to get only the libraries and compilers that you need with the Command Line Tools for Xcode. However, I use hardly any of its features and unless you’re an iOS or Mac developer you probably won’t either.

Xcode for mac os x 10.7.5 code#

I use the Xcode editor because I like its syntax highlighting, code completion, and organizer. On Lion you can install Xcode from the App Store, on Snow Leopard you’ll have to get an older Xcode from. You will need Apple’s developer tools in order to compile Python and the other installs. Update: If doing all the stuff below doesn’t seem like your cup of tea, it’s also possible to install Python, NumPy, SciPy, and matplotlib using double-click binary installers (resulting in a much less flexible installation), see this post to learn how.

Xcode for mac os x 10.7.5 download#

On Snow Leopard you won’t install Xcode via the App Store, you’ll have to download it from Apple.Īfter I’d helped my friend I found this blog post describing a procedure pretty much the same as below. These instructions are for Lion but should work on Snow Leopard or Mountain Lion without much trouble. See the “Install Python” page for the most recent instructions.Ī bit ago a friend and I both had fresh Mac OS X Lion installs so I helped him set up his computers with a scientific Python setup and did mine at the same time. Update: These instructions are over a year old, though they may still work for you.

Setting the State of a Postgres Sequence.I'm getting great results from pindel running on Ubuntu, but I'd really like to get it working on my mac as well. I've tried several permutations: pindel-master, samtools st-final, 0.1.19, skipping the initial 'make SAMTOOLS.' step, etc, with no luck. Ld: symbol(s) not found for architecture x86_64Ĭollect2: error: ld returned 1 exit status '_gxx_personality_v0', referenced from:ĭwarf Exception Unwind Info (_eh_frame) in pindel.oĭwarf Exception Unwind Info (_eh_frame) in reader.oĭwarf Exception Unwind Info (_eh_frame) in reporter.oĭwarf Exception Unwind Info (_eh_frame) in searcher.oĭwarf Exception Unwind Info (_eh_frame) in parameter.oĭwarf Exception Unwind Info (_eh_frame) in refreader.oĭwarf Exception Unwind Info (_eh_frame) in control_state.o Undefined symbols for architecture x86_64: Gcc pindel.o reader.o reporter.o searcher.o parameter.o refreader.o control_state.o search_deletions_nt.o search_inversions.o search_inversions_nt.o bam2depth.o search_tandem_duplications.o search_tandem_duplications_nt.o output_sorter.o farend_searcher.o search_variant.o searchshortinsertions.o searchdeletions.o output_file_data.o bddata.o shifted_vector.o read_buffer.o line_reader.o ifstream_line_reader.o gz_line_reader.o pindel_read_reader.o user_defined_settings.o fn_parameters.o logstream.o search_MEI_util.o search_MEI.o assembly.o genotyping.o -O3 -fopenmp -lm -lz -L/Users/coldrecd/source/samtools-0.1.18/ -lbam -o pindel INSTALL /Users/coldrecd/source/samtools-0.1.18 proceeds with only a few warnings, but ends with gcc -Wall -g -c -O3 -fopenmp -I/Users/coldrecd/source/samtools-0.1.18/ genotyping.cpp -o genotyping.o Next, make SAMTOOLS=/Users/coldrecd/source/samtools-0.1.18 appears to proceed normally I'm having a similar problem compiling pindel-0.2.5 on Mac OSĪfter compiling and checking samtools I added 'CXX=gcc47' to pindel-0.2.5/src/Makefile